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Introduction to Nextflow 250401

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Introduction to Nextflow 250401Introduction to Nextflow 250401

01/04/2025 to 02/04/2025

Introduction to Nextflow 250401

Bioinformatics room (CRG Training centre)

The aim of this course is to give a general overview on Nextflow, focusing on the execution, configuration and deployment of local and publicly available pipelines.

Topics that are going to be addressed:

  • Understand Nextflow’s basic concepts
  • Execute local and publicly available pipelines
  • Understand, write and modify pipeline configuration files
  • Know some of the possible pipeline deployment scenarios

What NOT to expect:

  • Learn about Linux command line or Bash shell. Participants should be already familiar with these concepts
  • Writing Nextflow pipelines. This topic will be part of a following advanced course.

Program:

Day 1 - First steps with Nextflow
1. Introduction
2. Basic concepts: processes and channels
3. Running pipelines

Day 2 - Configuration and execution
1. Configuration files and scopes
2. Software dependencies
3. Executors and profiles

Instructors: Emilio Palumbo & José Espinosa

Dates: 1st and 2nd April 2025 (10:30 -13:30)

Location: Bioinformatics room (CRG Training centre) - Presential

Maximum number of participants: 18

Registration deadline: 17th March 2025

Registration HERE

For any information, please send an email to CRG Training and Academic office (TAO): training@crg.eu

Training financiado por Ayuda:CEX2020-001049-S financiada por MCIN/ AEI / 10.13039/501100011033
 
           
PDF icon introduction_to_nextflow_28.02.2025.pdf

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