Selenoprofiles: profile-based scanning of eukaryotic genome sequences for selenoprotein genes (2010) Bioinformatics (Oxford, England)

Selenoprofiles: profile-based scanning of eukaryotic genome sequences for selenoprotein genes (2010) Bioinformatics (Oxford, England)

Here you have the full article in pdf:  http://bioinformatics.oxfordjournals.org/content/early/2010/09/21/bioinformatics.btq516.full.pdf?
ijkey=SoZbNas3eLI6Jzu&keytype=ref

Here you can download the supplementary material of the paper (format pdf): http://genome.crg.es/datasets/selenoprofiles2010/suppl_data.pdf

Selenoprofiles was run on all Ensembl genomes (version 52). Here you have the list of Ensembl transcripts identified as selenoproteins misannotations: http://genome.crg.es/datasets/selenoprofiles2010/misannotations_list.tar

And here's a graphical summary of all results (figure 3 of the main paper): Here you have the list of Ensembl transcripts identified as selenoproteins misannotations: http://genome.crg.es/datasets/selenoprofiles2010/results_ensembl52.png

 

please cite:

Selenoprofiles: profile-based scanning of eukaryotic genome sequences for selenoprotein genes
M. Mariotti; R. Guigo
Bioinformatics 2010; doi: 10.1093/bioinformatics/btq516